Carnation DB

Dca10087.1

Annotation

12-exons
f-1
sp|B9ILJ3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_737569#GO:0008060;GO:0008270;GO:0032312#2F1P0C
AT4G13350.1 | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602
Repeat List (scaffold1439)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10087.1	1	621	625	48.8	621	47	3e-139
Target_name	Start	End	Length	Cov(%)
sp\|B9ILJ3_POPTR	1	600	649	92.44

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca10087.1	1	621	625	42.4	621	41	4e-98
Target_name	Start	End	Length	Cov(%)
AT4G13350.1	1	555	602	92.19

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1439	Augustus	mRNA	26824	32533	.	+	.	ID=Dca10087.1;Parent=Dca10087
scaffold1439	Augustus	exon	26824	26922	.	+	.	ID=Dca10087.1.exon1;Parent=Dca10087.1
scaffold1439	Augustus	exon	28175	28236	.	+	.	ID=Dca10087.1.exon2;Parent=Dca10087.1
scaffold1439	Augustus	exon	28535	28622	.	+	.	ID=Dca10087.1.exon3;Parent=Dca10087.1
scaffold1439	Augustus	exon	28716	28777	.	+	.	ID=Dca10087.1.exon4;Parent=Dca10087.1
scaffold1439	Augustus	exon	29283	29370	.	+	.	ID=Dca10087.1.exon5;Parent=Dca10087.1
scaffold1439	Augustus	exon	29515	29952	.	+	.	ID=Dca10087.1.exon6;Parent=Dca10087.1
scaffold1439	Augustus	exon	30526	31068	.	+	.	ID=Dca10087.1.exon7;Parent=Dca10087.1
scaffold1439	Augustus	exon	31249	31347	.	+	.	ID=Dca10087.1.exon8;Parent=Dca10087.1
scaffold1439	Augustus	exon	31428	31532	.	+	.	ID=Dca10087.1.exon9;Parent=Dca10087.1
scaffold1439	Augustus	exon	31631	31714	.	+	.	ID=Dca10087.1.exon10;Parent=Dca10087.1
scaffold1439	Augustus	exon	32177	32336	.	+	.	ID=Dca10087.1.exon11;Parent=Dca10087.1
scaffold1439	Augustus	exon	32484	32533	.	+	.	ID=Dca10087.1.exon12;Parent=Dca10087.1