Carnation DB

Dca11931.1

Annotation

7-exons
f-1
sp|B9HWS9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_566736#unknown#0F0P0C
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=486
Repeat List (scaffold1538)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11931.1	1	493	494	51.61	493	46	8e-113
Target_name	Start	End	Length	Cov(%)
sp\|B9HWS9_POPTR	1	561	562	99.82

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca11931.1	1	474	494	39.06	474	37	1e-61
Target_name	Start	End	Length	Cov(%)
AT1G68920.1	1	464	486	95.47

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1538	Augustus	mRNA	21949	25236	.	-	.	ID=Dca11931.1;Parent=Dca11931
scaffold1538	Augustus	exon	21949	21986	.	-	.	ID=Dca11931.1.exon1;Parent=Dca11931.1
scaffold1538	Augustus	exon	22090	22177	.	-	.	ID=Dca11931.1.exon2;Parent=Dca11931.1
scaffold1538	Augustus	exon	22815	23018	.	-	.	ID=Dca11931.1.exon3;Parent=Dca11931.1
scaffold1538	Augustus	exon	23112	23183	.	-	.	ID=Dca11931.1.exon4;Parent=Dca11931.1
scaffold1538	Augustus	exon	23753	23818	.	-	.	ID=Dca11931.1.exon5;Parent=Dca11931.1
scaffold1538	Augustus	exon	23898	24089	.	-	.	ID=Dca11931.1.exon6;Parent=Dca11931.1
scaffold1538	Augustus	exon	24412	25236	.	-	.	ID=Dca11931.1.exon7;Parent=Dca11931.1