Carnation DB

Dca14377.1

Annotation

6-exons
f-1
sp|B9HY07_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_724181#GO:0008270#1F0P0C
sp|B9S8W6_RICCO#Membrane associated ring finger 1,8, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0836410#GO:0008270#1F0P0C
Repeat List (scaffold168)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca14377.1	14	231	231	75.32	218	72	1e-81
Target_name	Start	End	Length	Cov(%)
sp\|B9HY07_POPTR	40	280	280	86.07

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca14377.1	18	231	231	58.44	214	57	2e-62
Target_name	Start	End	Length	Cov(%)
Os08t0436200-01	43	275	277	84.11

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold168	Augus-PASA	mRNA	261538	266353	.	-	.	ID=Dca14377.1;Parent=Dca14377
scaffold168	Augus-PASA	exon	261538	261657	.	-	.	ID=Dca14377.1.exon1;Parent=Dca14377.1
scaffold168	Augus-PASA	exon	261775	261864	.	-	.	ID=Dca14377.1.exon2;Parent=Dca14377.1
scaffold168	Augus-PASA	exon	261960	262040	.	-	.	ID=Dca14377.1.exon3;Parent=Dca14377.1
scaffold168	Augustus	exon	262239	262395	.	-	.	ID=Dca14377.1.exon4;Parent=Dca14377.1
scaffold168	Augustus	exon	262714	262784	.	-	.	ID=Dca14377.1.exon5;Parent=Dca14377.1
scaffold168	Augustus	exon	266177	266353	.	-	.	ID=Dca14377.1.exon6;Parent=Dca14377.1