Dca15006.1
Annotation
- 3-exons
- f-1
- sp|B9HUL0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_725079#GO:0003676;GO:0000166;GO:0008270#3F0P0C
- AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr5:1192461-1195413 FORWARD LENGTH=310
- Repeat List (scaffold172)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15006.1 |
1 |
270 |
274 |
53.28 |
270 |
53 |
1e-60
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9HUL0_POPTR |
1 |
270 |
280 |
96.42 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15006.1 |
1 |
270 |
274 |
47.08 |
270 |
44 |
2e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G04280.1 |
1 |
294 |
310 |
94.83 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold172 |
Augustus |
mRNA |
187507 |
189432 |
. |
- |
. |
ID=Dca15006.1;Parent=Dca15006 |
| scaffold172 |
Augustus |
exon |
187507 |
187759 |
. |
- |
. |
ID=Dca15006.1.exon1;Parent=Dca15006.1 |
| scaffold172 |
Augustus |
exon |
187815 |
188275 |
. |
- |
. |
ID=Dca15006.1.exon2;Parent=Dca15006.1 |
| scaffold172 |
Augus-PASA |
exon |
189322 |
189432 |
. |
- |
. |
ID=Dca15006.1.exon3;Parent=Dca15006.1 |
