Dca15845.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold17753)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15845.1 |
29 |
490 |
543 |
34.62 |
462 |
41 |
5e-84
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
85 |
523 |
1050 |
41.8 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca15845.1 |
263 |
481 |
543 |
16.39 |
219 |
34 |
4e-32
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
521 |
779 |
1428 |
18.13 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold17753 |
Augustus |
mRNA |
575 |
3523 |
. |
+ |
. |
ID=Dca15845.1;Parent=Dca15845 |
| scaffold17753 |
Augustus |
exon |
575 |
1418 |
. |
+ |
. |
ID=Dca15845.1.exon1;Parent=Dca15845.1 |
| scaffold17753 |
Augustus |
exon |
2613 |
2727 |
. |
+ |
. |
ID=Dca15845.1.exon2;Parent=Dca15845.1 |
| scaffold17753 |
Augustus |
exon |
2851 |
3523 |
. |
+ |
. |
ID=Dca15845.1.exon3;Parent=Dca15845.1 |
