Dca16530.1
Annotation
- 3-exons
- f-1
- sp|Q2RBA0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g02700#GO:0003676#1F0P0C
- Repeat List (scaffold182)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16530.1 |
2 |
286 |
286 |
52.79 |
285 |
48 |
7e-68
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2RBA0_ORYSJ |
421 |
735 |
978 |
32.2 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16530.1 |
77 |
285 |
286 |
29.02 |
209 |
39 |
1e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
104 |
314 |
1262 |
16.71 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold182 |
Augustus |
mRNA |
13954 |
16490 |
. |
+ |
. |
ID=Dca16530.1;Parent=Dca16530 |
| scaffold182 |
Augustus |
exon |
13954 |
14312 |
. |
+ |
. |
ID=Dca16530.1.exon1;Parent=Dca16530.1 |
| scaffold182 |
Augustus |
exon |
14406 |
14899 |
. |
+ |
. |
ID=Dca16530.1.exon2;Parent=Dca16530.1 |
| scaffold182 |
Augustus |
exon |
16483 |
16490 |
. |
+ |
. |
ID=Dca16530.1.exon3;Parent=Dca16530.1 |
