Carnation DB

Dca17061.1

Annotation

7-exons
f-1
sp|B9T922_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_2004830#GO:0008242;GO:0019538#1F1P0C
AT1G28120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:9813219-9815143 REVERSE LENGTH=306
Repeat List (scaffold186)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17061.1	5	297	298	72.48	293	74	3e-125
Target_name	Start	End	Length	Cov(%)
sp\|B9T922_RICCO	12	304	304	96.38

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17061.1	4	297	298	66.1	294	68	2e-115
Target_name	Start	End	Length	Cov(%)
AT1G28120.1	9	295	306	93.79

seqname	source	feature	start	end	score	strand	frame	group
scaffold186	Augus-PASA	mRNA	76048	80351	.	+	.	ID=Dca17061.1;Parent=Dca17061
scaffold186	Augus-PASA	exon	76048	76197	.	+	.	ID=Dca17061.1.exon1;Parent=Dca17061.1
scaffold186	Augus-PASA	exon	76291	76443	.	+	.	ID=Dca17061.1.exon2;Parent=Dca17061.1
scaffold186	Augus-PASA	exon	76549	76671	.	+	.	ID=Dca17061.1.exon3;Parent=Dca17061.1
scaffold186	Augus-PASA	exon	76764	76816	.	+	.	ID=Dca17061.1.exon4;Parent=Dca17061.1
scaffold186	Augus-PASA	exon	76936	76985	.	+	.	ID=Dca17061.1.exon5;Parent=Dca17061.1
scaffold186	Augus-PASA	exon	77078	77178	.	+	.	ID=Dca17061.1.exon6;Parent=Dca17061.1
scaffold186	Augus-PASA	exon	80085	80351	.	+	.	ID=Dca17061.1.exon7;Parent=Dca17061.1