Dca17408.1
Annotation
- 3-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold18858)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17408.1 |
56 |
353 |
354 |
50 |
298 |
59 |
7e-100
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
122 |
424 |
964 |
31.43 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17408.1 |
69 |
297 |
354 |
26.55 |
229 |
41 |
7e-45
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
549 |
780 |
1428 |
16.24 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold18858 |
Augustus |
mRNA |
1669 |
3278 |
. |
+ |
. |
ID=Dca17408.1;Parent=Dca17408 |
| scaffold18858 |
Augustus |
exon |
1669 |
1803 |
. |
+ |
. |
ID=Dca17408.1.exon1;Parent=Dca17408.1 |
| scaffold18858 |
Augustus |
exon |
1905 |
1935 |
. |
+ |
. |
ID=Dca17408.1.exon2;Parent=Dca17408.1 |
| scaffold18858 |
Augustus |
exon |
2383 |
3278 |
. |
+ |
. |
ID=Dca17408.1.exon3;Parent=Dca17408.1 |
