Carnation DB

Dca17572.1

Annotation

16-exons
f-1
sp|D7TL42_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_08s0056g01250#GO:0005634;GO:0003743;GO:0008270;GO:0045893;GO:0006352#2F2P1C
Os05t0305100-01 Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2). Splice isoform 2.
Repeat List (scaffold1899)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17572.1	59	524	570	49.12	466	51	6e-136
Target_name	Start	End	Length	Cov(%)
sp\|D7TL42_VITVI	22	565	622	87.45

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca17572.1	49	559	570	42.8	511	42	2e-103
Target_name	Start	End	Length	Cov(%)
Os05t0305100-01	12	570	575	97.21

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1899	Augustus	mRNA	39486	50878	.	+	.	ID=Dca17572.1;Parent=Dca17572
scaffold1899	Augustus	exon	39486	39740	.	+	.	ID=Dca17572.1.exon1;Parent=Dca17572.1
scaffold1899	Augustus	exon	39852	39927	.	+	.	ID=Dca17572.1.exon2;Parent=Dca17572.1
scaffold1899	Augustus	exon	40011	40096	.	+	.	ID=Dca17572.1.exon3;Parent=Dca17572.1
scaffold1899	Augustus	exon	40192	40268	.	+	.	ID=Dca17572.1.exon4;Parent=Dca17572.1
scaffold1899	Augustus	exon	41436	41548	.	+	.	ID=Dca17572.1.exon5;Parent=Dca17572.1
scaffold1899	Augustus	exon	42888	42967	.	+	.	ID=Dca17572.1.exon6;Parent=Dca17572.1
scaffold1899	Augustus	exon	43563	43649	.	+	.	ID=Dca17572.1.exon7;Parent=Dca17572.1
scaffold1899	Augustus	exon	45267	45428	.	+	.	ID=Dca17572.1.exon8;Parent=Dca17572.1
scaffold1899	Augustus	exon	45507	45662	.	+	.	ID=Dca17572.1.exon9;Parent=Dca17572.1
scaffold1899	Augustus	exon	45950	45998	.	+	.	ID=Dca17572.1.exon10;Parent=Dca17572.1
scaffold1899	Augustus	exon	46110	46225	.	+	.	ID=Dca17572.1.exon11;Parent=Dca17572.1
scaffold1899	Augustus	exon	47097	47177	.	+	.	ID=Dca17572.1.exon12;Parent=Dca17572.1
scaffold1899	Augustus	exon	49559	49612	.	+	.	ID=Dca17572.1.exon13;Parent=Dca17572.1
scaffold1899	Augustus	exon	49916	49993	.	+	.	ID=Dca17572.1.exon14;Parent=Dca17572.1
scaffold1899	Augustus	exon	50136	50189	.	+	.	ID=Dca17572.1.exon15;Parent=Dca17572.1
scaffold1899	Augustus	exon	50690	50878	.	+	.	ID=Dca17572.1.exon16;Parent=Dca17572.1