Dca17941.1
Annotation
- 3-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1919)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17941.1 |
127 |
654 |
689 |
51.08 |
528 |
66 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
1057 |
1596 |
1597 |
33.81 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17941.1 |
166 |
607 |
689 |
27.43 |
442 |
42 |
2e-105
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
98 |
556 |
1262 |
36.37 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1919 |
Augustus |
mRNA |
41718 |
44552 |
. |
- |
. |
ID=Dca17941.1;Parent=Dca17941 |
| scaffold1919 |
Augustus |
exon |
41718 |
41826 |
. |
- |
. |
ID=Dca17941.1.exon1;Parent=Dca17941.1 |
| scaffold1919 |
Augustus |
exon |
42066 |
44003 |
. |
- |
. |
ID=Dca17941.1.exon2;Parent=Dca17941.1 |
| scaffold1919 |
Augustus |
exon |
44530 |
44552 |
. |
- |
. |
ID=Dca17941.1.exon3;Parent=Dca17941.1 |
