Carnation DB

Dca18529.1

Annotation

5-exons
f-1
sp|B9IQF4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_780590#unknown#0F0P0C
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:5847513-5849500 FORWARD LENGTH=262
Repeat List (scaffold196)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18529.1	15	233	241	55.6	219	58	3e-60
Target_name	Start	End	Length	Cov(%)
sp\|B9IQF4_POPTR	26	244	246	89.02

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca18529.1	17	232	241	53.94	216	57	5e-55
Target_name	Start	End	Length	Cov(%)
AT4G09180.1	31	257	262	86.64

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold196	Augus-PASA	mRNA	156163	158500	.	-	.	ID=Dca18529.1;Parent=Dca18529
scaffold196	Augus-PASA	exon	156163	156228	.	-	.	ID=Dca18529.1.exon1;Parent=Dca18529.1
scaffold196	Augus-PASA	exon	156325	156393	.	-	.	ID=Dca18529.1.exon2;Parent=Dca18529.1
scaffold196	Augus-PASA	exon	157387	157452	.	-	.	ID=Dca18529.1.exon3;Parent=Dca18529.1
scaffold196	Augustus	exon	157561	157689	.	-	.	ID=Dca18529.1.exon4;Parent=Dca18529.1
scaffold196	Augustus	exon	158105	158500	.	-	.	ID=Dca18529.1.exon5;Parent=Dca18529.1