Dca18560.1
Annotation
- 2-exons
- f-1
- sp|A5C0K0_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_017997#GO:0003676;GO:0008270#2F0P0C
- sp|Q2QQP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g30310#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1961)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18560.1 |
3 |
380 |
386 |
59.32 |
378 |
58 |
6e-132
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5C0K0_VITVI |
228 |
622 |
635 |
62.2 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18560.1 |
9 |
381 |
386 |
36.78 |
373 |
33 |
1e-62
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
927 |
1366 |
1428 |
30.81 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1961 |
Augustus |
mRNA |
47258 |
48618 |
. |
- |
. |
ID=Dca18560.1;Parent=Dca18560 |
| scaffold1961 |
Augustus |
exon |
47258 |
47570 |
. |
- |
. |
ID=Dca18560.1.exon1;Parent=Dca18560.1 |
| scaffold1961 |
Augustus |
exon |
47771 |
48618 |
. |
- |
. |
ID=Dca18560.1.exon2;Parent=Dca18560.1 |
