Dca18888.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16050#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold1986)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18888.1 |
1 |
691 |
691 |
56.72 |
691 |
55 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ5_ORYSJ |
482 |
1199 |
1325 |
54.18 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca18888.1 |
1 |
690 |
691 |
37.91 |
690 |
36 |
8e-125
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
613 |
1337 |
1539 |
47.1 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1986 |
Augustus |
mRNA |
4589 |
6873 |
. |
+ |
. |
ID=Dca18888.1;Parent=Dca18888 |
| scaffold1986 |
Augustus |
exon |
4589 |
5587 |
. |
+ |
. |
ID=Dca18888.1.exon1;Parent=Dca18888.1 |
| scaffold1986 |
Augustus |
exon |
5717 |
6248 |
. |
+ |
. |
ID=Dca18888.1.exon2;Parent=Dca18888.1 |
| scaffold1986 |
Augustus |
exon |
6329 |
6873 |
. |
+ |
. |
ID=Dca18888.1.exon3;Parent=Dca18888.1 |
