Carnation DB

Dca19434.1

Annotation

9-exons
f-1
sp|A5AJH7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_005069#unknown#0F0P0C
AT1G28410.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 425 Blast hits to 402 proteins in 77 species: Archae - 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:9976596-9979080 REVERSE LENGTH=277
Repeat List (scaffold201)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19434.1	47	281	288	30.9	235	34	1e-34
Target_name	Start	End	Length	Cov(%)
sp\|A5AJH7_VITVI	25	288	433	60.96

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19434.1	11	285	288	31.25	275	30	3e-26
Target_name	Start	End	Length	Cov(%)
AT1G28410.1	1	277	277	100

seqname	source	feature	start	end	score	strand	frame	group
scaffold201	Augus-PASA	mRNA	180507	186063	.	-	.	ID=Dca19434.1;Parent=Dca19434
scaffold201	Augus-PASA	exon	180507	180572	.	-	.	ID=Dca19434.1.exon1;Parent=Dca19434.1
scaffold201	Augus-PASA	exon	180659	180736	.	-	.	ID=Dca19434.1.exon2;Parent=Dca19434.1
scaffold201	Augus-PASA	exon	182165	182263	.	-	.	ID=Dca19434.1.exon3;Parent=Dca19434.1
scaffold201	Augus-PASA	exon	182441	182497	.	-	.	ID=Dca19434.1.exon4;Parent=Dca19434.1
scaffold201	Augus-PASA	exon	182605	182673	.	-	.	ID=Dca19434.1.exon5;Parent=Dca19434.1
scaffold201	Augus-PASA	exon	183205	183318	.	-	.	ID=Dca19434.1.exon6;Parent=Dca19434.1
scaffold201	Augustus	exon	183451	183495	.	-	.	ID=Dca19434.1.exon7;Parent=Dca19434.1
scaffold201	Augustus	exon	184220	184347	.	-	.	ID=Dca19434.1.exon8;Parent=Dca19434.1
scaffold201	Augustus	exon	185853	186063	.	-	.	ID=Dca19434.1.exon9;Parent=Dca19434.1