Dca20222.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold2073)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca20222.1 |
1 |
195 |
254 |
63.38 |
195 |
83 |
1e-93
|
Target_name |
Start |
End |
Length |
Cov(%) |
sp|Q2QUJ4_ORYSJ |
738 |
932 |
1050 |
18.57 |
AtOs (Arabidopsis thaliana & Oryza sativa)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca20222.1 |
13 |
195 |
254 |
26.77 |
183 |
37 |
2e-23
|
Target_name |
Start |
End |
Length |
Cov(%) |
Os08t0125300-01 |
1133 |
1307 |
1428 |
12.25 |
Coding region
seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
scaffold2073 |
Augustus |
mRNA |
3152 |
5957 |
. |
+ |
. |
ID=Dca20222.1;Parent=Dca20222 |
scaffold2073 |
Augustus |
exon |
3152 |
3914 |
. |
+ |
. |
ID=Dca20222.1.exon1;Parent=Dca20222.1 |
scaffold2073 |
Augustus |
exon |
5896 |
5957 |
. |
+ |
. |
ID=Dca20222.1.exon2;Parent=Dca20222.1 |