Carnation DB

Dca20250.1

Annotation

6-exons
f-1
sp|B9SRD6_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1124350#GO:0016021#0F0P1C
AT3G15380.1 | Symbols: | Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700
Repeat List (scaffold2076)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20250.1	1	354	445	60.89	354	77	5e-162
Target_name	Start	End	Length	Cov(%)
sp\|B9SRD6_RICCO	321	674	697	50.78

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20250.1	1	354	445	58.87	354	74	7e-149
Target_name	Start	End	Length	Cov(%)
AT3G15380.1	321	675	700	50.71

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2076	Augustus	mRNA	40572	45788	.	+	.	ID=Dca20250.1;Parent=Dca20250
scaffold2076	Augustus	exon	40572	40673	.	+	.	ID=Dca20250.1.exon1;Parent=Dca20250.1
scaffold2076	Augustus	exon	41979	42335	.	+	.	ID=Dca20250.1.exon2;Parent=Dca20250.1
scaffold2076	Augustus	exon	42760	43020	.	+	.	ID=Dca20250.1.exon3;Parent=Dca20250.1
scaffold2076	Augustus	exon	44057	44284	.	+	.	ID=Dca20250.1.exon4;Parent=Dca20250.1
scaffold2076	Augustus	exon	44606	44714	.	+	.	ID=Dca20250.1.exon5;Parent=Dca20250.1
scaffold2076	Augustus	exon	45508	45788	.	+	.	ID=Dca20250.1.exon6;Parent=Dca20250.1