Carnation DB

Dca20479.1

Annotation

6-exons
f-1
sp|B9I1Z7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_729008#GO:0000166;GO:0017069;GO:0000398#2F1P0C
AT1G76940.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28902707-28904085 REVERSE LENGTH=233
Repeat List (scaffold2096)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20479.1	1	113	330	15.15	113	44	4e-13
Target_name	Start	End	Length	Cov(%)
sp\|B9I1Z7_POPTR	1	102	233	43.77

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca20479.1	206	317	330	20.3	112	60	5e-35
Target_name	Start	End	Length	Cov(%)
Os06t0127500-01	140	249	266	41.35

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2096	Augustus	mRNA	94646	98811	.	-	.	ID=Dca20479.1;Parent=Dca20479
scaffold2096	Augustus	exon	94646	94749	.	-	.	ID=Dca20479.1.exon1;Parent=Dca20479.1
scaffold2096	Augustus	exon	96778	96859	.	-	.	ID=Dca20479.1.exon2;Parent=Dca20479.1
scaffold2096	Augustus	exon	96952	97013	.	-	.	ID=Dca20479.1.exon3;Parent=Dca20479.1
scaffold2096	Augustus	exon	97114	97597	.	-	.	ID=Dca20479.1.exon4;Parent=Dca20479.1
scaffold2096	Augustus	exon	97722	97843	.	-	.	ID=Dca20479.1.exon5;Parent=Dca20479.1
scaffold2096	Augustus	exon	98673	98811	.	-	.	ID=Dca20479.1.exon6;Parent=Dca20479.1