Dca2200.1
Annotation
- 2-exons
- f-1
- sp|F4NCH8_BETVU#Putative uncharacterized protein#Beta vulgaris subsp vulgaris#unknown#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- sp|O22148_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g45230#GO:0004523;GO:0003723;GO:0003964;GO:0006278#3F1P0C
- Repeat List (scaffold1073)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca2200.1 |
2 |
1006 |
1059 |
34.65 |
1005 |
37 |
2e-176
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|F4NCH8_BETVU |
38 |
1034 |
1365 |
73.04 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca2200.1 |
46 |
910 |
1059 |
24.45 |
865 |
30 |
5e-103
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os06t0484800-00 |
6 |
850 |
857 |
98.59 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1073 |
Augustus |
mRNA |
78097 |
81900 |
. |
- |
. |
ID=Dca2200.1;Parent=Dca2200 |
| scaffold1073 |
Augustus |
exon |
78097 |
78174 |
. |
- |
. |
ID=Dca2200.1.exon1;Parent=Dca2200.1 |
| scaffold1073 |
Augustus |
exon |
78799 |
81900 |
. |
- |
. |
ID=Dca2200.1.exon2;Parent=Dca2200.1 |
