Dca22853.1
Annotation
- 3-exons
- f-1
- sp|B9I9S4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_824185#unknown#0F0P0C
- AT1G02870.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:637401-638603 REVERSE LENGTH=193
- Repeat List (scaffold229)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22853.1 |
1 |
195 |
198 |
71.71 |
195 |
73 |
3e-76
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9I9S4_POPTR |
1 |
194 |
196 |
98.97 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22853.1 |
1 |
191 |
198 |
67.67 |
191 |
70 |
5e-74
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G02870.1 |
1 |
191 |
193 |
98.96 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold229 |
Augustus |
mRNA |
8765 |
10606 |
. |
- |
. |
ID=Dca22853.1;Parent=Dca22853 |
| scaffold229 |
Augustus |
exon |
8765 |
8893 |
. |
- |
. |
ID=Dca22853.1.exon1;Parent=Dca22853.1 |
| scaffold229 |
Augustus |
exon |
9080 |
9201 |
. |
- |
. |
ID=Dca22853.1.exon2;Parent=Dca22853.1 |
| scaffold229 |
Augustus |
exon |
10261 |
10606 |
. |
- |
. |
ID=Dca22853.1.exon3;Parent=Dca22853.1 |
