Carnation DB

Dca2299.1

Annotation

6-exons
f-982
sp|B9I227_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_422815#GO:0005634;GO:0003676#1F0P1C
sp|B9R9N0_RICCO#Cleavage and polyadenylation specificity factor cpsf, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1498840#GO:0005634;GO:0003676#1F0P1C
Repeat List (scaffold1078)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2299.1	3	236	270	30.37	234	35	1e-33
Target_name	Start	End	Length	Cov(%)
sp\|A5AE14_VITVI	86	315	1157	19.87

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2299.1	3	101	270	12.96	99	35	2e-14
Target_name	Start	End	Length	Cov(%)
AT1G21280.1	134	233	237	42.19

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1078	Augustus	mRNA	43794	47527	.	+	.	ID=Dca2299.1;Parent=Dca2299
scaffold1078	Augustus	exon	43794	44529	.	+	.	ID=Dca2299.1.exon1;Parent=Dca2299.1
scaffold1078	Augustus	exon	45876	45950	.	+	.	ID=Dca2299.1.exon2;Parent=Dca2299.1
scaffold1078	Augustus	exon	46060	46121	.	+	.	ID=Dca2299.1.exon3;Parent=Dca2299.1
scaffold1078	Augustus	exon	46608	46984	.	+	.	ID=Dca2299.1.exon4;Parent=Dca2299.1
scaffold1078	Augustus	exon	47226	47323	.	+	.	ID=Dca2299.1.exon5;Parent=Dca2299.1
scaffold1078	Augustus	exon	47430	47527	.	+	.	ID=Dca2299.1.exon6;Parent=Dca2299.1