Carnation DB

Dca23255.1

Annotation

20-exons
f-1
sp|D7SUX3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_04s0008g05800#GO:0003677#1F0P0C
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419435-15423939 REVERSE LENGTH=873
Repeat List (scaffold232)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23255.1	1236	1532	1533	8.28	297	41	2e-31
Target_name	Start	End	Length	Cov(%)
sp\|D7SUX3_VITVI	591	898	899	34.26

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23255.1	995	1403	1533	9.71	409	35	1e-27
Target_name	Start	End	Length	Cov(%)
AT4G31880.1	341	737	873	45.47

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold232	Augustus	mRNA	23105	36579	.	+	.	ID=Dca23255.1;Parent=Dca23255
scaffold232	Augustus	exon	23105	23239	.	+	.	ID=Dca23255.1.exon1;Parent=Dca23255.1
scaffold232	Augustus	exon	24372	24629	.	+	.	ID=Dca23255.1.exon2;Parent=Dca23255.1
scaffold232	Augustus	exon	24806	24958	.	+	.	ID=Dca23255.1.exon3;Parent=Dca23255.1
scaffold232	Augustus	exon	25203	25787	.	+	.	ID=Dca23255.1.exon4;Parent=Dca23255.1
scaffold232	Augustus	exon	26284	26463	.	+	.	ID=Dca23255.1.exon5;Parent=Dca23255.1
scaffold232	Augustus	exon	28791	28922	.	+	.	ID=Dca23255.1.exon6;Parent=Dca23255.1
scaffold232	Augustus	exon	29925	30128	.	+	.	ID=Dca23255.1.exon7;Parent=Dca23255.1
scaffold232	Augustus	exon	30544	30593	.	+	.	ID=Dca23255.1.exon8;Parent=Dca23255.1
scaffold232	Augustus	exon	31196	31322	.	+	.	ID=Dca23255.1.exon9;Parent=Dca23255.1
scaffold232	Augustus	exon	31409	31606	.	+	.	ID=Dca23255.1.exon10;Parent=Dca23255.1
scaffold232	Augustus	exon	32330	32377	.	+	.	ID=Dca23255.1.exon11;Parent=Dca23255.1
scaffold232	Augustus	exon	32455	32895	.	+	.	ID=Dca23255.1.exon12;Parent=Dca23255.1
scaffold232	Augustus	exon	32986	34146	.	+	.	ID=Dca23255.1.exon13;Parent=Dca23255.1
scaffold232	Augustus	exon	34250	34378	.	+	.	ID=Dca23255.1.exon14;Parent=Dca23255.1
scaffold232	Augus-PASA	exon	34725	34795	.	+	.	ID=Dca23255.1.exon15;Parent=Dca23255.1
scaffold232	Augus-PASA	exon	35194	35245	.	+	.	ID=Dca23255.1.exon16;Parent=Dca23255.1
scaffold232	Augus-PASA	exon	35329	35403	.	+	.	ID=Dca23255.1.exon17;Parent=Dca23255.1
scaffold232	Augus-PASA	exon	35478	35524	.	+	.	ID=Dca23255.1.exon18;Parent=Dca23255.1
scaffold232	Augus-PASA	exon	35925	35999	.	+	.	ID=Dca23255.1.exon19;Parent=Dca23255.1
scaffold232	Augus-PASA	exon	36099	36579	.	+	.	ID=Dca23255.1.exon20;Parent=Dca23255.1