Dca2340.1
Annotation
- 4-exons
- f-1
- sp|D7L296_ARALL#Ribosomal protein L34#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_478793#GO:0005840;GO:0003735;GO:0006412#1F1P1C
- Repeat List (scaffold108)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca2340.1 |
1 |
162 |
162 |
52.46 |
162 |
51 |
2e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D7L296_ARALL |
1 |
147 |
147 |
100 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca2340.1 |
91 |
162 |
162 |
30.24 |
72 |
69 |
4e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G13882.2 |
139 |
201 |
201 |
31.34 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold108 |
Augustus |
mRNA |
19870 |
28882 |
. |
+ |
. |
ID=Dca2340.1;Parent=Dca2340 |
| scaffold108 |
Augustus |
exon |
19870 |
20095 |
. |
+ |
. |
ID=Dca2340.1.exon1;Parent=Dca2340.1 |
| scaffold108 |
Augustus |
exon |
20202 |
20294 |
. |
+ |
. |
ID=Dca2340.1.exon2;Parent=Dca2340.1 |
| scaffold108 |
Augustus |
exon |
28444 |
28540 |
. |
+ |
. |
ID=Dca2340.1.exon3;Parent=Dca2340.1 |
| scaffold108 |
Augustus |
exon |
28810 |
28882 |
. |
+ |
. |
ID=Dca2340.1.exon4;Parent=Dca2340.1 |
