Carnation DB

Dca23430.1

Annotation

6-exons
f-1
sp|B9GH18_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_753756#GO:0006282#0F1P0C
Os04t0667900-01 Regulatory protein RecX family protein.
Repeat List (scaffold2339)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23430.1	11	381	383	40.46	371	40	2e-55
Target_name	Start	End	Length	Cov(%)
sp\|B9GH18_POPTR	5	374	376	98.4

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca23430.1	221	382	383	22.45	162	54	5e-46
Target_name	Start	End	Length	Cov(%)
Os04t0667900-01	116	275	277	57.76

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2339	Augus-PASA	mRNA	29331	33126	.	-	.	ID=Dca23430.1;Parent=Dca23430
scaffold2339	Augus-PASA	exon	29331	29609	.	-	.	ID=Dca23430.1.exon1;Parent=Dca23430.1
scaffold2339	Augus-PASA	exon	30597	30684	.	-	.	ID=Dca23430.1.exon2;Parent=Dca23430.1
scaffold2339	Augustus	exon	30970	31062	.	-	.	ID=Dca23430.1.exon3;Parent=Dca23430.1
scaffold2339	Augus-PASA	exon	31166	31484	.	-	.	ID=Dca23430.1.exon4;Parent=Dca23430.1
scaffold2339	Augus-PASA	exon	31835	32115	.	-	.	ID=Dca23430.1.exon5;Parent=Dca23430.1
scaffold2339	Augus-PASA	exon	33035	33126	.	-	.	ID=Dca23430.1.exon6;Parent=Dca23430.1