Carnation DB

Dca24838.1

Annotation

16-exons
f-1
sp|A9PEP6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_744891#GO:0004190;GO:0006508#1F1P0C
AT3G13235.1 | Symbols: | ubiquitin family protein | chr3:4271492-4274348 REVERSE LENGTH=414
Repeat List (scaffold247)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca24838.1	1	409	409	78.72	409	79	0
Target_name	Start	End	Length	Cov(%)
sp\|A9PEP6_POPTR	1	410	410	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca24838.1	1	409	409	74.81	409	74	5e-176
Target_name	Start	End	Length	Cov(%)
AT3G13235.1	1	414	414	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold247	Augus-PASA	mRNA	230613	241349	.	+	.	ID=Dca24838.1;Parent=Dca24838
scaffold247	Augus-PASA	exon	230613	230678	.	+	.	ID=Dca24838.1.exon1;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	230795	230827	.	+	.	ID=Dca24838.1.exon2;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	231334	231467	.	+	.	ID=Dca24838.1.exon3;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	231638	231749	.	+	.	ID=Dca24838.1.exon4;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	234129	234245	.	+	.	ID=Dca24838.1.exon5;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	235228	235293	.	+	.	ID=Dca24838.1.exon6;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	235527	235589	.	+	.	ID=Dca24838.1.exon7;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	235670	235714	.	+	.	ID=Dca24838.1.exon8;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	237166	237227	.	+	.	ID=Dca24838.1.exon9;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	238023	238116	.	+	.	ID=Dca24838.1.exon10;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	238496	238588	.	+	.	ID=Dca24838.1.exon11;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	238667	238736	.	+	.	ID=Dca24838.1.exon12;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	238825	238889	.	+	.	ID=Dca24838.1.exon13;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	238977	239031	.	+	.	ID=Dca24838.1.exon14;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	240381	240406	.	+	.	ID=Dca24838.1.exon15;Parent=Dca24838.1
scaffold247	Augus-PASA	exon	241221	241349	.	+	.	ID=Dca24838.1.exon16;Parent=Dca24838.1