Carnation DB

Dca26158.1

Annotation

6-exons
f-1
sp|B9N215_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_580779#GO:0016021;GO:0004252;GO:0006508#1F1P1C
AT5G38510.1 | Symbols: | Rhomboid-related intramembrane serine protease family protein | chr5:15417839-15420002 REVERSE LENGTH=434
Repeat List (scaffold26)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca26158.1	71	448	454	41.4	378	48	4e-98
Target_name	Start	End	Length	Cov(%)
sp\|B9N215_POPTR	110	490	492	77.43

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca26158.1	24	441	454	38.32	418	40	9e-83
Target_name	Start	End	Length	Cov(%)
AT5G38510.1	18	421	434	93.08

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold26	Augus-PASA	mRNA	247543	249732	.	-	.	ID=Dca26158.1;Parent=Dca26158
scaffold26	Augus-PASA	exon	247543	247804	.	-	.	ID=Dca26158.1.exon1;Parent=Dca26158.1
scaffold26	Augus-PASA	exon	247935	248092	.	-	.	ID=Dca26158.1.exon2;Parent=Dca26158.1
scaffold26	Augus-PASA	exon	248500	248670	.	-	.	ID=Dca26158.1.exon3;Parent=Dca26158.1
scaffold26	Augus-PASA	exon	248776	248941	.	-	.	ID=Dca26158.1.exon4;Parent=Dca26158.1
scaffold26	Augus-PASA	exon	249044	249233	.	-	.	ID=Dca26158.1.exon5;Parent=Dca26158.1
scaffold26	Augustus	exon	249315	249732	.	-	.	ID=Dca26158.1.exon6;Parent=Dca26158.1