Carnation DB

Dca27305.1

Annotation

7-exons
f-1
sp|B9HWS9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_566736#unknown#0F0P0C
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=486
Repeat List (scaffold2715)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca27305.1	1	485	495	53.93	485	48	7e-122
Target_name	Start	End	Length	Cov(%)
sp\|B9HWS9_POPTR	1	552	562	98.22

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca27305.1	1	477	495	43.43	477	42	1e-74
Target_name	Start	End	Length	Cov(%)
AT1G68920.1	1	469	486	96.5

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2715	Augus-PASA	mRNA	30979	36057	.	-	.	ID=Dca27305.1;Parent=Dca27305
scaffold2715	Augus-PASA	exon	30979	31016	.	-	.	ID=Dca27305.1.exon1;Parent=Dca27305.1
scaffold2715	Augus-PASA	exon	31632	31722	.	-	.	ID=Dca27305.1.exon2;Parent=Dca27305.1
scaffold2715	Augus-PASA	exon	31832	32035	.	-	.	ID=Dca27305.1.exon3;Parent=Dca27305.1
scaffold2715	Augus-PASA	exon	32127	32198	.	-	.	ID=Dca27305.1.exon4;Parent=Dca27305.1
scaffold2715	Augus-PASA	exon	34800	34865	.	-	.	ID=Dca27305.1.exon5;Parent=Dca27305.1
scaffold2715	Augustus	exon	34950	35171	.	-	.	ID=Dca27305.1.exon6;Parent=Dca27305.1
scaffold2715	Augustus	exon	35263	36057	.	-	.	ID=Dca27305.1.exon7;Parent=Dca27305.1