Dca27510.1
Annotation
- 4-exons
- f-1
- sp|A5AE14_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_036538#GO:0003676;GO:0008270#2F0P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold274)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27510.1 |
617 |
671 |
672 |
3.57 |
55 |
44 |
4e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5AE14_VITVI |
660 |
714 |
1157 |
4.75 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27510.1 |
6 |
221 |
672 |
11.01 |
216 |
34 |
6e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
16 |
231 |
237 |
91.13 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold274 |
Augustus |
mRNA |
110703 |
113603 |
. |
- |
. |
ID=Dca27510.1;Parent=Dca27510 |
| scaffold274 |
Augustus |
exon |
110703 |
111284 |
. |
- |
. |
ID=Dca27510.1.exon1;Parent=Dca27510.1 |
| scaffold274 |
Augustus |
exon |
111935 |
112345 |
. |
- |
. |
ID=Dca27510.1.exon2;Parent=Dca27510.1 |
| scaffold274 |
Augustus |
exon |
112493 |
112803 |
. |
- |
. |
ID=Dca27510.1.exon3;Parent=Dca27510.1 |
| scaffold274 |
Augustus |
exon |
112889 |
113603 |
. |
- |
. |
ID=Dca27510.1.exon4;Parent=Dca27510.1 |
