Dca27919.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold2783)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27919.1 |
34 |
447 |
531 |
32.76 |
414 |
39 |
5e-75
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
82 |
523 |
1050 |
42.09 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca27919.1 |
273 |
438 |
531 |
12.42 |
166 |
39 |
2e-27
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
609 |
779 |
1428 |
11.97 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2783 |
Augustus |
mRNA |
14043 |
16252 |
. |
- |
. |
ID=Dca27919.1;Parent=Dca27919 |
| scaffold2783 |
Augustus |
exon |
14043 |
14785 |
. |
- |
. |
ID=Dca27919.1.exon1;Parent=Dca27919.1 |
| scaffold2783 |
Augustus |
exon |
15330 |
15400 |
. |
- |
. |
ID=Dca27919.1.exon2;Parent=Dca27919.1 |
| scaffold2783 |
Augustus |
exon |
15471 |
16252 |
. |
- |
. |
ID=Dca27919.1.exon3;Parent=Dca27919.1 |
