Carnation DB

Dca28471.1

Annotation

5-exons
f-1
sp|F6H555_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0028g01320#GO:0016021;GO:0005634;GO:0006355#0F1P2C
AT2G42780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:17801037-17802646 FORWARD LENGTH=293
Repeat List (scaffold2837)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28471.1	19	186	188	53.19	168	60	1e-55
Target_name	Start	End	Length	Cov(%)
sp\|F6H555_VITVI	69	232	254	64.56

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca28471.1	20	186	188	44.14	167	50	1e-41
Target_name	Start	End	Length	Cov(%)
AT2G42780.1	11	176	293	56.65

seqname	source	feature	start	end	score	strand	frame	group
scaffold2837	Augustus	mRNA	15463	16613	.	+	.	ID=Dca28471.1;Parent=Dca28471
scaffold2837	Augustus	exon	15463	15666	.	+	.	ID=Dca28471.1.exon1;Parent=Dca28471.1
scaffold2837	Augustus	exon	15748	15885	.	+	.	ID=Dca28471.1.exon2;Parent=Dca28471.1
scaffold2837	Augustus	exon	16211	16289	.	+	.	ID=Dca28471.1.exon3;Parent=Dca28471.1
scaffold2837	Augustus	exon	16386	16457	.	+	.	ID=Dca28471.1.exon4;Parent=Dca28471.1
scaffold2837	Augustus	exon	16540	16613	.	+	.	ID=Dca28471.1.exon5;Parent=Dca28471.1