Carnation DB

Dca29608.1

Annotation

29-exons
f-1
sp|A3AU03_ORYSJ#Putative uncharacterized protein#Oryza sativa subsp japonica (Rice)#ORFNames=OsJ_14858#GO:0005524;GO:0008026;GO:0003676#3F0P0C
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459
Repeat List (scaffold2955)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca29608.1	30	1258	1263	48.77	1229	44	0
Target_name	Start	End	Length	Cov(%)
sp\|A3AU03_ORYSJ	39	1387	1388	97.19

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca29608.1	858	1259	1263	21.06	402	66	2e-158
Target_name	Start	End	Length	Cov(%)
AT1G58060.1	1056	1459	1459	27.69

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2955	Augus-PASA	mRNA	5810	29498	.	-	.	ID=Dca29608.1;Parent=Dca29608
scaffold2955	Augus-PASA	exon	5810	5899	.	-	.	ID=Dca29608.1.exon1;Parent=Dca29608.1
scaffold2955	Augus-PASA	exon	6290	6412	.	-	.	ID=Dca29608.1.exon2;Parent=Dca29608.1
scaffold2955	Augus-PASA	exon	7487	7579	.	-	.	ID=Dca29608.1.exon3;Parent=Dca29608.1
scaffold2955	Augus-PASA	exon	8078	8290	.	-	.	ID=Dca29608.1.exon4;Parent=Dca29608.1
scaffold2955	Augus-PASA	exon	10774	10860	.	-	.	ID=Dca29608.1.exon5;Parent=Dca29608.1
scaffold2955	Augus-PASA	exon	12012	12081	.	-	.	ID=Dca29608.1.exon6;Parent=Dca29608.1
scaffold2955	Augus-PASA	exon	12749	12819	.	-	.	ID=Dca29608.1.exon7;Parent=Dca29608.1
scaffold2955	Augustus	exon	13126	13266	.	-	.	ID=Dca29608.1.exon8;Parent=Dca29608.1
scaffold2955	Augustus	exon	13358	13456	.	-	.	ID=Dca29608.1.exon9;Parent=Dca29608.1
scaffold2955	Augustus	exon	14990	15073	.	-	.	ID=Dca29608.1.exon10;Parent=Dca29608.1
scaffold2955	Augustus	exon	15839	15895	.	-	.	ID=Dca29608.1.exon11;Parent=Dca29608.1
scaffold2955	Augustus	exon	15991	16080	.	-	.	ID=Dca29608.1.exon12;Parent=Dca29608.1
scaffold2955	Augustus	exon	17143	17295	.	-	.	ID=Dca29608.1.exon13;Parent=Dca29608.1
scaffold2955	Augustus	exon	17379	17480	.	-	.	ID=Dca29608.1.exon14;Parent=Dca29608.1
scaffold2955	Augustus	exon	18444	18624	.	-	.	ID=Dca29608.1.exon15;Parent=Dca29608.1
scaffold2955	Augustus	exon	18706	18788	.	-	.	ID=Dca29608.1.exon16;Parent=Dca29608.1
scaffold2955	Augustus	exon	21517	21597	.	-	.	ID=Dca29608.1.exon17;Parent=Dca29608.1
scaffold2955	Augustus	exon	22911	23033	.	-	.	ID=Dca29608.1.exon18;Parent=Dca29608.1
scaffold2955	Augustus	exon	23990	24069	.	-	.	ID=Dca29608.1.exon19;Parent=Dca29608.1
scaffold2955	Augustus	exon	24347	24514	.	-	.	ID=Dca29608.1.exon20;Parent=Dca29608.1
scaffold2955	Augustus	exon	24606	24717	.	-	.	ID=Dca29608.1.exon21;Parent=Dca29608.1
scaffold2955	Augustus	exon	25065	25283	.	-	.	ID=Dca29608.1.exon22;Parent=Dca29608.1
scaffold2955	Augustus	exon	25599	25963	.	-	.	ID=Dca29608.1.exon23;Parent=Dca29608.1
scaffold2955	Augustus	exon	26052	26202	.	-	.	ID=Dca29608.1.exon24;Parent=Dca29608.1
scaffold2955	Augustus	exon	26478	26531	.	-	.	ID=Dca29608.1.exon25;Parent=Dca29608.1
scaffold2955	Augustus	exon	27195	27391	.	-	.	ID=Dca29608.1.exon26;Parent=Dca29608.1
scaffold2955	Augustus	exon	27511	27610	.	-	.	ID=Dca29608.1.exon27;Parent=Dca29608.1
scaffold2955	Augustus	exon	28293	28400	.	-	.	ID=Dca29608.1.exon28;Parent=Dca29608.1
scaffold2955	Augustus	exon	29202	29498	.	-	.	ID=Dca29608.1.exon29;Parent=Dca29608.1