Carnation DB

Dca30505.1

Annotation

5-exons
f-1
sp|E2DN01_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
sp|Q53KB3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g26410#GO:0003723;GO:0003964;GO:0006278#2F1P0C
Repeat List (scaffold3048)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30505.1	110	207	213	37.08	98	81	5e-43
Target_name	Start	End	Length	Cov(%)
sp\|E2DN01_BETVU	1099	1196	1717	5.7

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30505.1	109	207	213	20.18	99	44	7e-18
Target_name	Start	End	Length	Cov(%)
Os12t0142900-02	454	552	707	14

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3048	Augustus	mRNA	1636	11585	.	-	.	ID=Dca30505.1;Parent=Dca30505
scaffold3048	Augustus	exon	1636	1947	.	-	.	ID=Dca30505.1.exon1;Parent=Dca30505.1
scaffold3048	Augustus	exon	4857	4988	.	-	.	ID=Dca30505.1.exon2;Parent=Dca30505.1
scaffold3048	Augustus	exon	5516	5632	.	-	.	ID=Dca30505.1.exon3;Parent=Dca30505.1
scaffold3048	Augustus	exon	6947	7017	.	-	.	ID=Dca30505.1.exon4;Parent=Dca30505.1
scaffold3048	Augustus	exon	11576	11585	.	-	.	ID=Dca30505.1.exon5;Parent=Dca30505.1