Dca30771.1
Annotation
- 4-exons
- f-1
- sp|A5BPL3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_028741#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold3086)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30771.1 |
40 |
219 |
444 |
18.91 |
180 |
47 |
3e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BPL3_VITVI |
41 |
220 |
1262 |
14.26 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30771.1 |
40 |
221 |
444 |
13.73 |
182 |
33 |
6e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
40 |
223 |
237 |
77.63 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3086 |
Augustus |
mRNA |
33987 |
37941 |
. |
+ |
. |
ID=Dca30771.1;Parent=Dca30771 |
| scaffold3086 |
Augustus |
exon |
33987 |
34095 |
. |
+ |
. |
ID=Dca30771.1.exon1;Parent=Dca30771.1 |
| scaffold3086 |
Augustus |
exon |
35417 |
36156 |
. |
+ |
. |
ID=Dca30771.1.exon2;Parent=Dca30771.1 |
| scaffold3086 |
Augustus |
exon |
36271 |
36408 |
. |
+ |
. |
ID=Dca30771.1.exon3;Parent=Dca30771.1 |
| scaffold3086 |
Augustus |
exon |
37594 |
37941 |
. |
+ |
. |
ID=Dca30771.1.exon4;Parent=Dca30771.1 |
