Carnation DB

Dca30887.1

Annotation

7-exons
f-1
sp|F6HX38_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_09s0002g05100#GO:0005622#0F0P1C
sp|G7IMD2_MEDTR#DNA repair protein XRCC1#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_2g102430#GO:0005622#0F0P1C
Repeat List (scaffold31)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30887.1	1	389	392	52.29	389	52	1e-103
Target_name	Start	End	Length	Cov(%)
sp\|F6HX38_VITVI	1	385	387	99.48

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30887.1	17	385	392	46.17	369	48	1e-88
Target_name	Start	End	Length	Cov(%)
AT1G80420.1	4	348	353	97.73

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold31	Augustus	mRNA	215062	218518	.	+	.	ID=Dca30887.1;Parent=Dca30887
scaffold31	Augustus	exon	215062	215301	.	+	.	ID=Dca30887.1.exon1;Parent=Dca30887.1
scaffold31	Augustus	exon	215390	215578	.	+	.	ID=Dca30887.1.exon2;Parent=Dca30887.1
scaffold31	Augus-PASA	exon	216181	216292	.	+	.	ID=Dca30887.1.exon3;Parent=Dca30887.1
scaffold31	Augus-PASA	exon	216828	216913	.	+	.	ID=Dca30887.1.exon4;Parent=Dca30887.1
scaffold31	Augus-PASA	exon	217288	217407	.	+	.	ID=Dca30887.1.exon5;Parent=Dca30887.1
scaffold31	Augus-PASA	exon	217997	218083	.	+	.	ID=Dca30887.1.exon6;Parent=Dca30887.1
scaffold31	Augus-PASA	exon	218174	218518	.	+	.	ID=Dca30887.1.exon7;Parent=Dca30887.1