Dca30989.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3109)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30989.1 |
34 |
542 |
544 |
31.61 |
509 |
31 |
9e-58
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
82 |
575 |
1050 |
47.04 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca30989.1 |
306 |
433 |
544 |
8.63 |
128 |
36 |
2e-17
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
649 |
779 |
1428 |
9.17 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3109 |
Augustus |
mRNA |
34141 |
36484 |
. |
+ |
. |
ID=Dca30989.1;Parent=Dca30989 |
| scaffold3109 |
Augustus |
exon |
34141 |
35062 |
. |
+ |
. |
ID=Dca30989.1.exon1;Parent=Dca30989.1 |
| scaffold3109 |
Augustus |
exon |
35164 |
35194 |
. |
+ |
. |
ID=Dca30989.1.exon2;Parent=Dca30989.1 |
| scaffold3109 |
Augustus |
exon |
35803 |
36484 |
. |
+ |
. |
ID=Dca30989.1.exon3;Parent=Dca30989.1 |
