Carnation DB

Dca35634.1

Annotation

6-exons
f-1
sp|Q2QYG3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g02780#unknown#0F0P0C
Repeat List (scaffold371)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35634.1	2	49	71	50.7	48	75	2e-15
Target_name	Start	End	Length	Cov(%)
sp\|C5YL82_SORBI	451	498	623	7.7

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35634.1	5	49	71	30.98	45	49	2e-08
Target_name	Start	End	Length	Cov(%)
ATMG00810.1	139	183	240	18.75

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold371	Augustus	mRNA	141535	146756	.	+	.	ID=Dca35634.1;Parent=Dca35634
scaffold371	Augustus	exon	141535	142143	.	+	.	ID=Dca35634.1.exon1;Parent=Dca35634.1
scaffold371	Augustus	exon	142241	142556	.	+	.	ID=Dca35634.1.exon2;Parent=Dca35634.1
scaffold371	Augustus	exon	142814	142952	.	+	.	ID=Dca35634.1.exon3;Parent=Dca35634.1
scaffold371	Augustus	exon	143061	143373	.	+	.	ID=Dca35634.1.exon4;Parent=Dca35634.1
scaffold371	Augustus	exon	145071	145551	.	+	.	ID=Dca35634.1.exon5;Parent=Dca35634.1
scaffold371	Augustus	exon	146551	146756	.	+	.	ID=Dca35634.1.exon6;Parent=Dca35634.1