Dca36404.1
Annotation
- 3-exons
- f-1
- sp|Q53ND1_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g05840#GO:0005622;GO:0004527;GO:0003676;GO:0008270;GO:0015074#3F1P1C
- Repeat List (scaffold382)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36404.1 |
2 |
458 |
458 |
56.98 |
457 |
54 |
4e-139
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53ND1_ORYSJ |
767 |
1239 |
2340 |
20.21 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca36404.1 |
24 |
457 |
458 |
34.06 |
434 |
33 |
1e-62
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
624 |
1100 |
1401 |
34.04 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold382 |
Augustus |
mRNA |
133617 |
135432 |
. |
- |
. |
ID=Dca36404.1;Parent=Dca36404 |
| scaffold382 |
Augustus |
exon |
133617 |
134366 |
. |
- |
. |
ID=Dca36404.1.exon1;Parent=Dca36404.1 |
| scaffold382 |
Augustus |
exon |
134467 |
135027 |
. |
- |
. |
ID=Dca36404.1.exon2;Parent=Dca36404.1 |
| scaffold382 |
Augustus |
exon |
135367 |
135432 |
. |
- |
. |
ID=Dca36404.1.exon3;Parent=Dca36404.1 |
