Dca37367.1
Annotation
- 1-exons
- r-1
- sp|B9I949_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_572467#GO:0005488#1F0P0C
- AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink). | chr4:573098-577243 REVERSE LENGTH=1110
- Repeat List (scaffold398)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca37367.1 |
34 |
465 |
466 |
58.58 |
432 |
64 |
2e-167
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9I949_POPTR |
43 |
474 |
475 |
90.94 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca37367.1 |
236 |
449 |
466 |
17.59 |
214 |
39 |
9e-42
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G01400.1 |
159 |
368 |
1110 |
18.91 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold398 |
Augus-PASA |
mRNA |
98864 |
100264 |
. |
+ |
. |
ID=Dca37367.1;Parent=Dca37367 |
| scaffold398 |
Augus-PASA |
exon |
98864 |
100264 |
. |
+ |
. |
ID=Dca37367.1.exon1;Parent=Dca37367.1 |
