Carnation DB

Dca37930.1

Annotation

5-exons
f-1
sp|B9IND1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1105509#GO:0005576;GO:0004650;GO:0005975;GO:0007047#1F2P1C
AT3G42950.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:15015383-15017800 FORWARD LENGTH=484
Repeat List (scaffold404)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca37930.1	1	421	423	84.63	421	85	0
Target_name	Start	End	Length	Cov(%)
sp\|B9IND1_POPTR	69	493	495	85.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca37930.1	1	423	423	78.48	423	78	0
Target_name	Start	End	Length	Cov(%)
AT3G42950.1	58	484	484	88.22

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold404	Augustus	mRNA	108823	110923	.	-	.	ID=Dca37930.1;Parent=Dca37930
scaffold404	Augustus	exon	108823	109345	.	-	.	ID=Dca37930.1.exon1;Parent=Dca37930.1
scaffold404	Augustus	exon	109441	109594	.	-	.	ID=Dca37930.1.exon2;Parent=Dca37930.1
scaffold404	Augustus	exon	109688	109936	.	-	.	ID=Dca37930.1.exon3;Parent=Dca37930.1
scaffold404	Augus-PASA	exon	110132	110252	.	-	.	ID=Dca37930.1.exon4;Parent=Dca37930.1
scaffold404	Augus-PASA	exon	110699	110923	.	-	.	ID=Dca37930.1.exon5;Parent=Dca37930.1