Dca38391.1
Annotation
- 3-exons
- f-1
- sp|Q2QQ28_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g32440#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold4107)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38391.1 |
2 |
407 |
465 |
41.72 |
406 |
47 |
2e-98
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QQ28_ORYSJ |
86 |
497 |
829 |
49.69 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca38391.1 |
288 |
403 |
465 |
9.46 |
116 |
37 |
4e-17
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os01t0909600-01 |
214 |
330 |
332 |
35.24 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold4107 |
Augustus |
mRNA |
6848 |
13404 |
. |
+ |
. |
ID=Dca38391.1;Parent=Dca38391 |
| scaffold4107 |
Augustus |
exon |
6848 |
7682 |
. |
+ |
. |
ID=Dca38391.1.exon1;Parent=Dca38391.1 |
| scaffold4107 |
Augustus |
exon |
8117 |
8509 |
. |
+ |
. |
ID=Dca38391.1.exon2;Parent=Dca38391.1 |
| scaffold4107 |
Augustus |
exon |
13235 |
13404 |
. |
+ |
. |
ID=Dca38391.1.exon3;Parent=Dca38391.1 |
