Carnation DB

Dca38401.1

Annotation

8-exons
f-1
sp|D7L118_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_480774#GO:0016021;GO:0015450#1F0P1C
AT2G18710.1 | Symbols: SCY1 | SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551
Repeat List (scaffold411)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38401.1	70	547	547	74.77	478	86	0
Target_name	Start	End	Length	Cov(%)
sp\|D7L118_ARALL	69	546	549	87.06

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38401.1	70	547	547	75.13	478	86	0
Target_name	Start	End	Length	Cov(%)
AT2G18710.1	71	548	551	86.75

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold411	Augus-PASA	mRNA	57248	61157	.	-	.	ID=Dca38401.1;Parent=Dca38401
scaffold411	Augus-PASA	exon	57248	57469	.	-	.	ID=Dca38401.1.exon1;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	57776	57939	.	-	.	ID=Dca38401.1.exon2;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	58199	58322	.	-	.	ID=Dca38401.1.exon3;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	58439	58528	.	-	.	ID=Dca38401.1.exon4;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	58624	58923	.	-	.	ID=Dca38401.1.exon5;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	59416	59801	.	-	.	ID=Dca38401.1.exon6;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	60005	60159	.	-	.	ID=Dca38401.1.exon7;Parent=Dca38401.1
scaffold411	Augus-PASA	exon	60955	61157	.	-	.	ID=Dca38401.1.exon8;Parent=Dca38401.1