Carnation DB

Dca38893.1

Annotation

7-exons
f-1
sp|D7LL83_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_481856#GO:0016021;GO:0005506;GO:0016491;GO:0006633#2F1P1C
AT1G07420.1 | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-oxidase 2-1 | chr1:2277910-2280033 FORWARD LENGTH=266
Repeat List (scaffold419)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38893.1	1	260	265	82.64	260	85	1e-132
Target_name	Start	End	Length	Cov(%)
sp\|D7LL83_ARALL	1	260	260	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca38893.1	1	264	265	83.01	264	84	4e-132
Target_name	Start	End	Length	Cov(%)
AT1G07420.1	1	265	266	99.62

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold419	Augus-PASA	mRNA	118933	121674	.	+	.	ID=Dca38893.1;Parent=Dca38893
scaffold419	Augus-PASA	exon	118933	118962	.	+	.	ID=Dca38893.1.exon1;Parent=Dca38893.1
scaffold419	Augus-PASA	exon	119945	120082	.	+	.	ID=Dca38893.1.exon2;Parent=Dca38893.1
scaffold419	Augus-PASA	exon	120303	120448	.	+	.	ID=Dca38893.1.exon3;Parent=Dca38893.1
scaffold419	Augus-PASA	exon	120606	120725	.	+	.	ID=Dca38893.1.exon4;Parent=Dca38893.1
scaffold419	Augus-PASA	exon	120810	121022	.	+	.	ID=Dca38893.1.exon5;Parent=Dca38893.1
scaffold419	Augus-PASA	exon	121125	121205	.	+	.	ID=Dca38893.1.exon6;Parent=Dca38893.1
scaffold419	Augus-PASA	exon	121605	121674	.	+	.	ID=Dca38893.1.exon7;Parent=Dca38893.1
scaffold419	Augustus	mRNA	119831	121674	.	+	.	ID=Dca38893.2;Parent=Dca38893
scaffold419	Augustus	exon	119831	119845	.	+	.	ID=Dca38893.2.exon1;Parent=Dca38893.2
scaffold419	Augus-PASA	exon	119945	120082	.	+	.	ID=Dca38893.2.exon2;Parent=Dca38893.2
scaffold419	Augus-PASA	exon	120303	120448	.	+	.	ID=Dca38893.2.exon3;Parent=Dca38893.2
scaffold419	Augus-PASA	exon	120606	120725	.	+	.	ID=Dca38893.2.exon4;Parent=Dca38893.2
scaffold419	Augus-PASA	exon	120810	121022	.	+	.	ID=Dca38893.2.exon5;Parent=Dca38893.2
scaffold419	Augus-PASA	exon	121125	121205	.	+	.	ID=Dca38893.2.exon6;Parent=Dca38893.2
scaffold419	Augus-PASA	exon	121605	121674	.	+	.	ID=Dca38893.2.exon7;Parent=Dca38893.2