Carnation DB

Dca3891.1

Annotation

11-exons
f-1
sp|B9RNL6_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_0918390#GO:0000775;GO:0005634;GO:0051301;GO:0007059#0F2P2C
AT5G10710.2 | Symbols: | INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:3379619-3382648 FORWARD LENGTH=312
Repeat List (scaffold114)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3891.1	1	307	310	71.93	307	73	2e-130
Target_name	Start	End	Length	Cov(%)
sp\|B9RNL6_RICCO	44	348	348	87.64

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3891.1	3	306	310	57.41	304	59	3e-106
Target_name	Start	End	Length	Cov(%)
AT5G10710.2	9	312	312	97.43

seqname	source	feature	start	end	score	strand	frame	group
scaffold114	Augustus	mRNA	159866	166074	.	+	.	ID=Dca3891.1;Parent=Dca3891
scaffold114	Augustus	exon	159866	159908	.	+	.	ID=Dca3891.1.exon1;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	160013	160061	.	+	.	ID=Dca3891.1.exon2;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	160942	161012	.	+	.	ID=Dca3891.1.exon3;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	161291	161349	.	+	.	ID=Dca3891.1.exon4;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	161466	161561	.	+	.	ID=Dca3891.1.exon5;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	162840	162897	.	+	.	ID=Dca3891.1.exon6;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	163920	164056	.	+	.	ID=Dca3891.1.exon7;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	164150	164206	.	+	.	ID=Dca3891.1.exon8;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	164421	164518	.	+	.	ID=Dca3891.1.exon9;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	165158	165342	.	+	.	ID=Dca3891.1.exon10;Parent=Dca3891.1
scaffold114	Augus-PASA	exon	165995	166074	.	+	.	ID=Dca3891.1.exon11;Parent=Dca3891.1