Dca39309.1
Annotation
- 3-exons
- f-1
- sp|O64473_ARATH#Putative non-LTR retroelement reverse transcriptase#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g19100#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold425)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39309.1 |
52 |
586 |
591 |
32.14 |
535 |
31 |
8e-69
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O64473_ARATH |
742 |
1348 |
1447 |
41.94 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca39309.1 |
302 |
457 |
591 |
8.12 |
156 |
30 |
3e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os06t0484800-00 |
629 |
789 |
857 |
18.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold425 |
Augustus |
mRNA |
24540 |
27396 |
. |
+ |
. |
ID=Dca39309.1;Parent=Dca39309 |
| scaffold425 |
Augustus |
exon |
24540 |
25435 |
. |
+ |
. |
ID=Dca39309.1.exon1;Parent=Dca39309.1 |
| scaffold425 |
Augustus |
exon |
26442 |
26921 |
. |
+ |
. |
ID=Dca39309.1.exon2;Parent=Dca39309.1 |
| scaffold425 |
Augustus |
exon |
26997 |
27396 |
. |
+ |
. |
ID=Dca39309.1.exon3;Parent=Dca39309.1 |
