Dca40003.1
Annotation
- 3-exons
- f-1
- sp|E5GBG5_CUCME#Ty1-copia retrotransposon protein#Cucumis melo subsp melo#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold436)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca40003.1 |
463 |
735 |
822 |
14.35 |
273 |
40 |
1e-43
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E5GBG5_CUCME |
738 |
1038 |
1038 |
28.99 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca40003.1 |
658 |
803 |
822 |
5.71 |
146 |
33 |
7e-14
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1269 |
1405 |
1428 |
9.59 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold436 |
Augustus |
mRNA |
145239 |
149184 |
. |
- |
. |
ID=Dca40003.1;Parent=Dca40003 |
| scaffold436 |
Augustus |
exon |
145239 |
145652 |
. |
- |
. |
ID=Dca40003.1.exon1;Parent=Dca40003.1 |
| scaffold436 |
Augustus |
exon |
146354 |
147043 |
. |
- |
. |
ID=Dca40003.1.exon2;Parent=Dca40003.1 |
| scaffold436 |
Augustus |
exon |
147820 |
149184 |
. |
- |
. |
ID=Dca40003.1.exon3;Parent=Dca40003.1 |
