Dca40012.1
Annotation
- 2-exons
- f-1
- sp|Q339S4_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g18860#unknown#0F0P0C
- Repeat List (scaffold436)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca40012.1 |
16 |
478 |
522 |
29.88 |
463 |
34 |
1e-55
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q339S4_ORYSJ |
28 |
423 |
1050 |
37.71 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca40012.1 |
16 |
278 |
522 |
16.09 |
263 |
31 |
9e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G48050.1 |
13 |
283 |
369 |
73.44 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold436 |
Augustus |
mRNA |
180560 |
183374 |
. |
+ |
. |
ID=Dca40012.1;Parent=Dca40012 |
| scaffold436 |
Augustus |
exon |
180560 |
181988 |
. |
+ |
. |
ID=Dca40012.1.exon1;Parent=Dca40012.1 |
| scaffold436 |
Augustus |
exon |
183235 |
183374 |
. |
+ |
. |
ID=Dca40012.1.exon2;Parent=Dca40012.1 |
