Carnation DB

Dca40301.1

Annotation

8-exons
f-1
sp|A5BF91_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_028128#GO:0005789;GO:0016021;GO:0006506#0F1P2C
AT1G16040.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:5504747-5506456 FORWARD LENGTH=226
Repeat List (scaffold4407)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40301.1	1	204	219	53.88	204	58	2e-67
Target_name	Start	End	Length	Cov(%)
sp\|A5BF91_VITVI	28	231	246	82.92

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca40301.1	13	213	219	47.94	201	53	2e-57
Target_name	Start	End	Length	Cov(%)
AT1G16040.1	22	222	226	88.93

seqname	source	feature	start	end	score	strand	frame	group
scaffold4407	Augus-PASA	mRNA	17846	23416	.	+	.	ID=Dca40301.1;Parent=Dca40301
scaffold4407	Augus-PASA	exon	17846	18001	.	+	.	ID=Dca40301.1.exon1;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	18100	18165	.	+	.	ID=Dca40301.1.exon2;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	18304	18346	.	+	.	ID=Dca40301.1.exon3;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	19728	19782	.	+	.	ID=Dca40301.1.exon4;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	20381	20429	.	+	.	ID=Dca40301.1.exon5;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	21132	21199	.	+	.	ID=Dca40301.1.exon6;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	21692	21800	.	+	.	ID=Dca40301.1.exon7;Parent=Dca40301.1
scaffold4407	Augus-PASA	exon	23303	23416	.	+	.	ID=Dca40301.1.exon8;Parent=Dca40301.1