Dca40879.1
Annotation
- 3-exons
- f-1
- sp|Q9ZPU4_ARATH#Putative retroelement pol polyprotein#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g13940#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold45)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca40879.1 |
101 |
374 |
456 |
21.71 |
274 |
33 |
3e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9ZPU4_ARATH |
20 |
317 |
1501 |
19.85 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca40879.1 |
132 |
322 |
456 |
14.91 |
191 |
36 |
2e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
38 |
229 |
237 |
81.01 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold45 |
Augustus |
mRNA |
113661 |
116003 |
. |
+ |
. |
ID=Dca40879.1;Parent=Dca40879 |
| scaffold45 |
Augustus |
exon |
113661 |
113818 |
. |
+ |
. |
ID=Dca40879.1.exon1;Parent=Dca40879.1 |
| scaffold45 |
Augustus |
exon |
114530 |
114669 |
. |
+ |
. |
ID=Dca40879.1.exon2;Parent=Dca40879.1 |
| scaffold45 |
Augustus |
exon |
114931 |
116003 |
. |
+ |
. |
ID=Dca40879.1.exon3;Parent=Dca40879.1 |
