Carnation DB

Dca41775.1

Annotation

18-exons
f-1
sp|G1FCJ2_9CARY#Putative DEAD-box ATP-dependent RNA helicase#Tamarix hispida#unknown#GO:0005524;GO:0008026;GO:0003676#3F0P0C
Repeat List (scaffold4655)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca41775.1	53	563	956	41.31	511	77	0
Target_name	Start	End	Length	Cov(%)
sp\|G1FCJ2_9CARY	251	766	783	65.9

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca41775.1	85	563	956	36.4	479	73	0
Target_name	Start	End	Length	Cov(%)
AT5G08610.1	355	833	850	56.35

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4655	Augustus	mRNA	306	11592	.	+	.	ID=Dca41775.1;Parent=Dca41775
scaffold4655	Augustus	exon	306	643	.	+	.	ID=Dca41775.1.exon1;Parent=Dca41775.1
scaffold4655	Augustus	exon	781	887	.	+	.	ID=Dca41775.1.exon2;Parent=Dca41775.1
scaffold4655	Augustus	exon	1757	1812	.	+	.	ID=Dca41775.1.exon3;Parent=Dca41775.1
scaffold4655	Augustus	exon	2178	2402	.	+	.	ID=Dca41775.1.exon4;Parent=Dca41775.1
scaffold4655	Augustus	exon	2775	2981	.	+	.	ID=Dca41775.1.exon5;Parent=Dca41775.1
scaffold4655	Augustus	exon	3064	3150	.	+	.	ID=Dca41775.1.exon6;Parent=Dca41775.1
scaffold4655	Augustus	exon	3236	3331	.	+	.	ID=Dca41775.1.exon7;Parent=Dca41775.1
scaffold4655	Augustus	exon	3546	3761	.	+	.	ID=Dca41775.1.exon8;Parent=Dca41775.1
scaffold4655	Augustus	exon	4041	4223	.	+	.	ID=Dca41775.1.exon9;Parent=Dca41775.1
scaffold4655	Augustus	exon	4507	4683	.	+	.	ID=Dca41775.1.exon10;Parent=Dca41775.1
scaffold4655	Augustus	exon	7399	7467	.	+	.	ID=Dca41775.1.exon11;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	8115	8282	.	+	.	ID=Dca41775.1.exon12;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	8373	8478	.	+	.	ID=Dca41775.1.exon13;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	8612	8794	.	+	.	ID=Dca41775.1.exon14;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	9743	9908	.	+	.	ID=Dca41775.1.exon15;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	10316	10641	.	+	.	ID=Dca41775.1.exon16;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	11092	11181	.	+	.	ID=Dca41775.1.exon17;Parent=Dca41775.1
scaffold4655	Augus-PASA	exon	11522	11592	.	+	.	ID=Dca41775.1.exon18;Parent=Dca41775.1