Carnation DB

Dca41977.1

Annotation

6-exons
f-1
sp|D7M640_ARALL#Integral membrane Yip1 family protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_489578#GO:0016020#0F0P1C
Repeat List (scaffold4694)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca41977.1	1	273	273	79.48	273	78	6e-128
Target_name	Start	End	Length	Cov(%)
sp\|D7M640_ARALL	2	280	280	99.64

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca41977.1	1	273	273	79.85	273	78	2e-128
Target_name	Start	End	Length	Cov(%)
AT5G27490.1	3	282	282	99.29

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold4694	Augus-PASA	mRNA	1245	4016	.	+	.	ID=Dca41977.1;Parent=Dca41977
scaffold4694	Augus-PASA	exon	1245	1283	.	+	.	ID=Dca41977.1.exon1;Parent=Dca41977.1
scaffold4694	Augus-PASA	exon	1430	1469	.	+	.	ID=Dca41977.1.exon2;Parent=Dca41977.1
scaffold4694	Augus-PASA	exon	1583	1663	.	+	.	ID=Dca41977.1.exon3;Parent=Dca41977.1
scaffold4694	Augus-PASA	exon	2266	2452	.	+	.	ID=Dca41977.1.exon4;Parent=Dca41977.1
scaffold4694	Augus-PASA	exon	3024	3291	.	+	.	ID=Dca41977.1.exon5;Parent=Dca41977.1
scaffold4694	Augus-PASA	exon	3810	4016	.	+	.	ID=Dca41977.1.exon6;Parent=Dca41977.1
scaffold4694	Augus-PASA	mRNA	1245	4016	.	+	.	ID=Dca41977.2;Parent=Dca41977
scaffold4694	Augus-PASA	exon	1245	1301	.	+	.	ID=Dca41977.2.exon1;Parent=Dca41977.2
scaffold4694	Augus-PASA	exon	1430	1469	.	+	.	ID=Dca41977.2.exon2;Parent=Dca41977.2
scaffold4694	Augus-PASA	exon	1583	1663	.	+	.	ID=Dca41977.2.exon3;Parent=Dca41977.2
scaffold4694	Augus-PASA	exon	2266	2452	.	+	.	ID=Dca41977.2.exon4;Parent=Dca41977.2
scaffold4694	Augus-PASA	exon	3024	3291	.	+	.	ID=Dca41977.2.exon5;Parent=Dca41977.2
scaffold4694	Augus-PASA	exon	3810	4016	.	+	.	ID=Dca41977.2.exon6;Parent=Dca41977.2