Carnation DB

Dca42482.1

Annotation

6-exons
f-1
sp|Q2AA50_ASPOF#Retrotransposon gag protein#Asparagus officinalis (Garden asparagus)#ORFNames=19.t00014#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Repeat List (scaffold478)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42482.1	113	1420	1457	48.18	1308	49	0
Target_name	Start	End	Length	Cov(%)
sp\|Q2AA50_ASPOF	199	1598	1788	78.29

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca42482.1	677	1397	1457	15.78	721	31	7e-78
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	580	1287	1539	46

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold478	Augustus	mRNA	14197	19050	.	+	.	ID=Dca42482.1;Parent=Dca42482
scaffold478	Augustus	exon	14197	14365	.	+	.	ID=Dca42482.1.exon1;Parent=Dca42482.1
scaffold478	Augustus	exon	14503	14642	.	+	.	ID=Dca42482.1.exon2;Parent=Dca42482.1
scaffold478	Augustus	exon	14710	15342	.	+	.	ID=Dca42482.1.exon3;Parent=Dca42482.1
scaffold478	Augustus	exon	15425	15631	.	+	.	ID=Dca42482.1.exon4;Parent=Dca42482.1
scaffold478	Augustus	exon	15724	17498	.	+	.	ID=Dca42482.1.exon5;Parent=Dca42482.1
scaffold478	Augustus	exon	17601	19050	.	+	.	ID=Dca42482.1.exon6;Parent=Dca42482.1